DNA sequence assembly and alignment
CodonCode Aligner is a program that helps with DNA barcoding, sequence assembly and contig editing, and mutation detection. The Aligner has a user-friendly and easy-to-understand interface while fully supporting quality scores of sequences compatible with Phred-Phrap.
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basic information
- Loading sequences from text files - End Clip function (a feature to trim low-quality sequence ends) - Contig assembly - Search for heterozygous mutations - Loading and editing assemblies created with Phrap - Group-based assembly and alignment based on sample names - Analysis of insertions and deletions in heterozygosity - Ability to run Phred and Phrap directly from the project, etc.
Price range
P3
Delivery Time
P3
Applications/Examples of results
【Barcode of Insect Species in Pakistan】 This was used in the analysis of barcode sequence data for economically important insect species in Pakistan, a joint project between the National Institute for Biotechnology and Genetic Engineering in Pakistan and the Biodiversity Institute in Ontario, Canada. 【Conservation Genetics Research on the Greater Roadrunner】 In this user case, mitochondrial and nuclear markers were used to assess genetic variation and gene flow concerning the population and conservation genetics of the Greater Roadrunner (scientific name Geococcyx californianus). 【Classification and Conservation of Landbirds in Aldabra Atoll】 At the UNESCO World Heritage site of Aldabra Atoll, this was used to study the taxonomic status of two endemic landbird species (Aldabra White-throated Rail and Aldabra Rail) and the effects of hybridization between the invasive White-throated Rail and the endemic Aldabra White-throated Rail.
Company information
Even in a rapidly changing world, the philosophy of HuLinks has not changed since its founding. The greatness of humanity lies in our ability to think, create, and carve out a new tomorrow. We aim to contribute to society by providing carefully selected solutions that support this remarkable human ability—intellectual creation—while also offering a more comfortable environment and enhancing productivity.