Rich annotations are provided for nucleic acid sequences and amino acid sequences to assist in the functional interpretation of genes.
(1) Annotation using BLAST against NCBI-nr (2) Annotation using EggNOG, which is an OrthologDB (3) Annotation using InterPro (5) Utilization of RNA-seq reads
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basic information
(1) Execute BLAST (diamond) against NCBI-nr and provide three types of tab-separated text: - All BLAST results including those with low scores - Best hit protein = TOP hit - Named best hit protein = TOP hit with meaningful descriptions in the definition (2) Provide search results for EggNOG (http://eggnog5.embl.de/#/app/home) in tab-separated text: - Preferred name = Gene name - Description = Gene description - Gos - EC - KEGG - CAZy - BiGG_Reaction - PFAMs (3) InterPro is a database that integrates multiple diman databases. By conducting a search in this database, multiple domain information from various databases will be provided for one query. (4) Using RNA-seq reads, provide assembled mRNA sequences and mapping data to the genome.
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- We support the functional interpretation of genes (amino acid sequences) of interest. - We extract genes (amino acid sequences) that are believed to have specific functions.
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Since its establishment in 1987, Maze Corporation has been engaged in business in the field of biotechnology, taking a stance of research support based on IT technology. If you have any concerns, regardless of the size of the issue, we would be grateful if you could reach out to us.
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